Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890468.1_cds_XP_016445173.1_40157
CDS Infomation

[gene=LOC107770385] [db_xref=GeneID:107770385] [protein=homeobox-leucine zipper protein HDG11-like] [protein_id=XP_016445173.1] [location=join(41597..41724,41855..41972,42057..42245,42369..42836,42948..43049,43153..43365,43464..43644,43751..44019,44267..44356,44486..44881)] [gbkey=CDS]
Sequence

ATGGAGTACGGCAGCGGAGGTGGTGGTGGCACTAGCAGCGGCGGCGGCGGCGATCCCCAC
GACGCCGCCGAGCGAAGGAAGAAACGTTATCATCGTCACACTGCTAACCAAATTCAAAGG
CTTGAATCTATTTTCAAAGAATGTCCTCACCCGGACGAGAAGACAAGATTGCAATTAAGC
AGAGATTTAGGCTTAGCTCCTCGTCAGATTAAGTTTTGGTTCCAAAATAGGAGGACTCAA
ATGAAGGCTCAACATGAGAGAGCAGACAATTGTGCACTTAGAGCAGAAAATGATAAAATT
CGATGTGAAAATATAGCAATCAGAGAAGCACTCAAGAATGTGATTTGCCCATCATGTGGA
GGTCCTCCTGTTACTGAAGATTCATATTTTGATGAGCAAAAGTTGAGAATCGAAAACATG
CAATTAAAAGAAGAGCTTGATAAAGTATCTAGTATTGCTGCTAAATATATAGGGAGGCCT
ATTTCACAACTCCCACCAGTGCAACCTATTCATCTATCTTCACTAGATTTGTCTATGTCT
AGTTTTGTTGGCCATGTCCCTAATTCCCTTGATCTTGATCTCGATCTTCTACCTGGAAGT
TCATCGACTATTCCGGGTTTAGCCTTCGCCTCGTTGAATTTATCGGACATTGATAAGTCC
CTTATGGCTGATATTGCTGGGAATGCAATGGAGGAACTCATTAGATTGGTGCAAACCAAT
GAACCTTTGTGGATGAAGTCCGCTATTGATGGCAAAGATGTGCTTAATTTCGAGAACTAT
GATCGGATATTCCCAAGGGCTAATAGTCATTTAAAAAATCACAATGTTCGGATTGAGGCT
TCCAGGGATTCAGGTGTTGTTATTATGAATGGTTTAGCATTGGTCGATATGTTTATGGAC
GCGAATAAATGGCAGGAATTCTTTCCTACAATTGTTTCAAAGGCTAGGACGCTTGAAGTA
ATATCATCTGGTGTGATGGGAAGCCGAATGAGTACATTGCAATTGATGTATGAAGAATTG
CAAGTGCTTTCGCCATTGGTTCCAACGCGACAATTGTATTTCCTAAGGTTTTGTCAACAG
ATTGAGCAAAGCTCGTGGGCAATAGTTGATGTTTCTTATGATATAACTCAAGAAAATCTG
TATTCTAACACTTCTTGCAAGGTTCATAGGCTTCCTTCAGGATGTTTGATACAAGATATG
CCCAATGGTTATTCCAAGGTTACTTGGATGGAACATGTAGAAGTGGAAGAGAAAGGTATA
ATGCATAGGCTATGTAGAGATCTTATACACAGTGGGTTGGCATTTGGAGCAGGGAGATGG
GTTGGCACCCTTCAAAGAGTTTGTGAAAGATATGCTTGTCTCATGGTTAATAGCAACCCT
ACTCATGGCCTTGGTGGAGTAATTCCATCGCCCGAAGGGAAGAGGAGCATGATGAAACTA
GCAAAAAGAATGGTGAGCAATTTCTGTGCCAGCATAAATCCATCTAATGGACATCAATGG
AACACAAATTCTGGGTTGAATGAGTTTGAAGTCAGAGCTACCCTTCAAAAGAGCACCGAT
CCTGGTCAGCCCAATGGCGTAATCATTAGTGCAGCCACAACCATTTGGCTGCCAGTTCCT
CCACAAAATGTCTTCAATTTCTTCAGGGATGAACGGACTCGACCCCAGTGGGATGTCCTT
TCCAACCAAAATCCAGTGCAAGAAGTAGCTCATATTGCGAATGGCTCTCATCCAGGGAAC
TGCATTTCTGTGCTCCGGGCCTATAACACTAGCCAGAACAACATGTTAATACTCCAAGAA
AGTTGCATAGACTCATCAGGGGCACTAGTAGTGTATAGTCCAGTCGATGTACCAGCTATC
AACATAGCGATGAGCGGTGAGGACCCCACGTATATCCCGTTACTACCCTCGGGGTTCACG
ATATTGCCAGATGGCCATCAACTAGACCAAGATGCAGCATCATGCAGCAGCAGCTCAAAT
GCAAGTACTATAGGAGGCAGGTCAGGGGGTTCACTTATAACAGTAGTGTTCCAAATTCTA
GTAAGCAGCTTGCCATCAGCTAAAATGAGTCCAGAATCAGTAAACACTGTGAATAACCTT
ATAGGCAGCACTGTTCACCAAATTAAAGCTGCCTTGAATTGCTCCACTTCTTGA

Peptide Sequence

PEP ID

XP_016445173.1
PEP Infomation

PREDICTED: homeobox-leucine zipper protein HDG11-like [Nicotiana tabacum]
Sequence

MEYGSGGGGGTSSGGGGDPHDAAERRKKRYHRHTANQIQRLESIFKECPHPDEKTRLQLS
RDLGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCG
GPPVTEDSYFDEQKLRIENMQLKEELDKVSSIAAKYIGRPISQLPPVQPIHLSSLDLSMS
SFVGHVPNSLDLDLDLLPGSSSTIPGLAFASLNLSDIDKSLMADIAGNAMEELIRLVQTN
EPLWMKSAIDGKDVLNFENYDRIFPRANSHLKNHNVRIEASRDSGVVIMNGLALVDMFMD
ANKWQEFFPTIVSKARTLEVISSGVMGSRMSTLQLMYEELQVLSPLVPTRQLYFLRFCQQ
IEQSSWAIVDVSYDITQENLYSNTSCKVHRLPSGCLIQDMPNGYSKVTWMEHVEVEEKGI
MHRLCRDLIHSGLAFGAGRWVGTLQRVCERYACLMVNSNPTHGLGGVIPSPEGKRSMMKL
AKRMVSNFCASINPSNGHQWNTNSGLNEFEVRATLQKSTDPGQPNGVIISAATTIWLPVP
PQNVFNFFRDERTRPQWDVLSNQNPVQEVAHIANGSHPGNCISVLRAYNTSQNNMLILQE
SCIDSSGALVVYSPVDVPAINIAMSGEDPTYIPLLPSGFTILPDGHQLDQDAASCSSSSN
ASTIGGRSGGSLITVVFQILVSSLPSAKMSPESVNTVNNLIGSTVHQIKAALNCSTS

Transcript Sequence

Gene sequence data has not been registered.